Len_g13406

Description : not classified & original description: none

Gene families : OG0000163 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g13406

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00216540	evm_27.TU.AmTr_v1...	AAA-ATPase At5g57480 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT3G28580	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	OrthoFinder output from all 47 species
Adi_g031480	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g06181	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g55732	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene69592.t1	Aspi01Gene69592	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22117	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.19G071100.1	Ceric.19G071100	not classified & original description: pacid=50575396...	0.05	OrthoFinder output from all 47 species
GSVIVT01032552001	No alias	AAA-ATPase At3g28580 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_27548	AATP1	AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os01g45450.1	LOC_Os01g45450	AAA-ATPase At5g17740 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os03g58790.1	LOC_Os03g58790	AAA-ATPase At3g28580 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
LOC_Os07g09420.1	LOC_Os07g09420	AAA-ATPase At3g28580 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os12g28460.1	LOC_Os12g28460	AAA-ATPase At3g28580 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_10067279g0010	No alias	AAA-ATPase At5g57480 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_10435468g0020	No alias	AAA-ATPase At3g28510 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_344969g0010	No alias	AAA-ATPase At4g25835 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Pir_g04536	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g09595	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017709	No alias	not classified & original description: CDS=1-1293	0.02	OrthoFinder output from all 47 species
Solyc12g055810.1.1	Solyc12g055810	AAA-ATPase At5g57480 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
Zm00001e000097_P001	Zm00001e000097	AAA-ATPase At2g46620 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Zm00001e007733_P001	AATP1, Zm00001e007733	AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Zm00001e027961_P001	Zm00001e027961	AAA-ATPase At3g50940 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Zm00001e033043_P001	Zm00001e033043	AAA-ATPase At3g28580 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0016597	amino acid binding	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0043177	organic acid binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025753	AAA_N_dom	26	118
IPR003959	ATPase_AAA_core	243	386

External Links

No external refs found!

Len_g13406

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation