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  5. Len_g13816

Len_g13816 (RH8, ATRH8)


Aliases : RH8, ATRH8

Description : DDX6-type mRNA helicase *(RH12/RH8) & original description: none


Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g13816

Target Alias Description ECC score Gene Family Method Actions
AT3G61240 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Ceric.07G064200.1 RH8, ATRH8,... DDX6-type mRNA helicase *(RH12/RH8) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001086.7 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
GSVIVT01019787001 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01026866001 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os02g42860.1 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Lfl_g02022 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c11_17170V3.1 RH8, ATRH8, Pp3c11_17170 RNAhelicase-like 8 0.01 OrthoFinder output from all 47 species
Sam_g24921 No alias DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g094350.4.1 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g017530.3.1 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e015237_P002 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 295 401
IPR011545 DEAD/DEAH_box_helicase_dom 94 257
No external refs found!