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  5. Len_g14311

Len_g14311


Description : associated component *(AFR) of histone deacetylase machineries & original description: none


Gene families : OG0001072 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g14311
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AT1G19330 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
Adi_g002827 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Adi_g009990 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Adi_g016707 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Adi_g042773 No alias associated component *(AFR) of histone deacetylase... 0.08 OrthoFinder output from all 47 species
Adi_g046047 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Adi_g077025 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Adi_g077051 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Adi_g115577 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Aev_g02770 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ala_g01904 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Als_g09801 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Als_g23594 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Aop_g26979 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g038914 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Azfi_s0305.g063893 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Azfi_s0873.g090694 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Azfi_s3373.g115509 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Cba_g50138 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ceric.18G085500.1 Ceric.18G085500 associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ceric.28G016000.1 Ceric.28G016000 associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Dcu_g43177 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Dcu_g47805 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
GSVIVT01009650001 No alias Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
GSVIVT01019028001 No alias Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
GSVIVT01019388001 No alias Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
LOC_Os04g08450.3 LOC_Os04g08450 associated component SAP30 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
LOC_Os10g21460.1 LOC_Os10g21460 associated component SAP30 of histone deacetylase machineries 0.07 OrthoFinder output from all 47 species
Lfl_g18360 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Mp7g07500.1 No alias associated component SAP30 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Nbi_g00911 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Pir_g60562 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Ppi_g63618 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007685 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Sam_g20047 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Sam_g30194 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Solyc04g079930.3.1 Solyc04g079930 associated component SAP30 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Spa_g11049 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Tin_g10450 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Zm00001e027006_P001 Zm00001e027006 associated component SAP30 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 172 225
No external refs found!