Len_g14660 (ARF16)

Aliases : ARF16

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g14660
Cluster	HCCA: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00044p00116500	ARF1,...	Auxin response factor 7 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
Als_g51944	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02260	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g22075	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g27918	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g12905	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene55123.t1	ARF6, Aspi01Gene55123	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.10G078200.1	ARF6, Ceric.10G078200	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
GSVIVT01032251001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_12414	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os10g33940.1	ARF16, LOC_Os10g33940	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Msp_g16463	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g13886	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g30468	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000212	ARF4	not classified & original description: CDS=1-1212	0.03	OrthoFinder output from all 47 species
Smo425183	ARF6	Auxin response factor 6 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
Solyc11g069190.2.1	ARF4, Solyc11g069190	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e003591_P003	ARF19, IAA22,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e036249_P003	ARF19, IAA22,...	transcription factor (ARF)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	HCCA
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0016229	steroid dehydrogenase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	114	215
IPR010525	ARF_dom	296	379

External Links

No external refs found!

Len_g14660 (ARF16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation