Len_g15959 (TMO6)

Aliases : TMO6

Description : transcription factor *(DOF) & original description: none

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g15959

Target	Alias	Description	ECC score	Gene Family Method
AT1G28310	No alias	Dof-type zinc finger DNA-binding family protein	0.03	OrthoFinder output from all 47 species
AT4G24060	No alias	Dof-type zinc finger DNA-binding family protein	0.02	OrthoFinder output from all 47 species
AT5G65590	No alias	Dof-type zinc finger DNA-binding family protein	0.02	OrthoFinder output from all 47 species
Aob_g14979	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g18235	CDF2	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g09379	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.19G013700.1	TMO6, Ceric.19G013700	transcription factor *(DOF) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g06183	OBP4	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g04712	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13892	OBP1	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011433001	CDF2	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
GSVIVT01016538001	OBP3	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
LOC_Os04g58190.1	LOC_Os04g58190	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
LOC_Os10g35300.2	LOC_Os10g35300	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
MA_16692g0010	TMO6	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Mp2g20790.1	TMO6	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Msp_g32354	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g03879	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g10327	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g05155	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g09266	No alias	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g13474	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g43145	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g49468	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g076850.2.1	Solyc02g076850	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc02g078620.1.1	ADOF2, DOF2,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc02g088070.3.1	CDF3, Solyc02g088070	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc03g082840.3.1	DAG1, Solyc03g082840	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc05g054510.2.1	OBP3, Solyc05g054510	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc06g075370.3.1	TMO6, Solyc06g075370	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc06g150130.1.1	OBP4, Solyc06g150130	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Tin_g27639	No alias	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e003414_P001	OBP1, Zm00001e003414	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e017319_P001	CDF2, Zm00001e017319	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0001932	regulation of protein phosphorylation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030688	preribosome, small subunit precursor	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042325	regulation of phosphorylation	IEP	HCCA
BP	GO:0043549	regulation of kinase activity	IEP	HCCA
BP	GO:0045859	regulation of protein kinase activity	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051338	regulation of transferase activity	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	42	97

External Links

No external refs found!

Len_g15959 (TMO6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation