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  5. Len_g16246

Len_g16246


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g16246

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g080720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099216 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37659 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37107 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g39230 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene32466.t1 Aspi01Gene32466 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34740.t1 Aspi01Gene34740 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63595.t1 EMB2261, Aspi01Gene63595 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026593 CRR22 not classified & original description: CDS=1-1842 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030697 No alias not classified & original description: CDS=1-2361 0.02 OrthoFinder output from all 47 species
Cba_g05866 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g31308 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75371 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G068200.1 OTP86, Ceric.04G068200 not classified & original description: pacid=50632337... 0.03 OrthoFinder output from all 47 species
Ceric.13G019600.1 Ceric.13G019600 not classified & original description: pacid=50636734... 0.03 OrthoFinder output from all 47 species
Ceric.13G057700.1 Ceric.13G057700 not classified & original description: pacid=50635307... 0.03 OrthoFinder output from all 47 species
Ceric.25G047500.1 Ceric.25G047500 not classified & original description: pacid=50594463... 0.02 OrthoFinder output from all 47 species
Ceric.27G069000.1 Ceric.27G069000 not classified & original description: pacid=50605685... 0.03 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.02 OrthoFinder output from all 47 species
Dac_g09096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35515 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g10089 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18372 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024606001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
GSVIVT01028747001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_23018 REME1 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Len_g05333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19402 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_7907g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Msp_g04377 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06422 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26145 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g27237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12406 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03998 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019284 No alias not classified & original description: CDS=34-390 0.04 OrthoFinder output from all 47 species
Sam_g11900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g097850.1.1 Solyc03g097850 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
Solyc04g074160.3.1 Solyc04g074160 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc06g064600.1.1 Solyc06g064600 Pentatricopeptide repeat-containing protein At1g56690,... 0.02 OrthoFinder output from all 47 species
Spa_g04185 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06622 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11066 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23118 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 116 164
IPR002885 Pentatricopeptide_repeat 192 213
IPR002885 Pentatricopeptide_repeat 323 351
IPR002885 Pentatricopeptide_repeat 695 723
IPR002885 Pentatricopeptide_repeat 220 248
IPR002885 Pentatricopeptide_repeat 524 553
IPR002885 Pentatricopeptide_repeat 496 522
IPR002885 Pentatricopeptide_repeat 625 655
IPR002885 Pentatricopeptide_repeat 393 414
IPR002885 Pentatricopeptide_repeat 597 623
IPR002885 Pentatricopeptide_repeat 748 804
IPR002885 Pentatricopeptide_repeat 420 468
No external refs found!