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  5. Len_g17127

Len_g17127


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g17127
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
AT4G16470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g46737 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35562 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.13G062400.1 Ceric.13G062400 not classified & original description: pacid=50636814... 0.05 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.05 OrthoFinder output from all 47 species
Ceric.28G052000.1 OTP86, Ceric.28G052000 not classified & original description: pacid=50569960... 0.07 OrthoFinder output from all 47 species
LOC_Os01g46230.1 MEF1, LOC_Os01g46230 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Ore_g01500 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23555 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g42473 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016757 glycosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 122 170
IPR002885 Pentatricopeptide_repeat 359 406
IPR002885 Pentatricopeptide_repeat 224 263
IPR002885 Pentatricopeptide_repeat 434 456
IPR002885 Pentatricopeptide_repeat 24 51
IPR002885 Pentatricopeptide_repeat 199 221
No external refs found!