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  5. Len_g17769

Len_g17769 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g17769
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00174700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g017307 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g024957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g026204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g11263 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14718 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31182 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05916 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15487 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19114 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02240 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05192 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39631.t1 CRR2, Aspi01Gene39631 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025565 No alias not classified & original description: CDS=1-3945 0.04 OrthoFinder output from all 47 species
Azfi_s0050.g030980 No alias not classified & original description: CDS=1-2649 0.04 OrthoFinder output from all 47 species
Azfi_s0059.g034605 No alias ssDNA-binding protein *(OSB) & original description: CDS=21-2777 0.03 OrthoFinder output from all 47 species
Azfi_s0229.g059121 CRR22 not classified & original description: CDS=1-2070 0.03 OrthoFinder output from all 47 species
Cba_g06861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67769 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.03 OrthoFinder output from all 47 species
Ceric.14G004700.1 Ceric.14G004700 not classified & original description: pacid=50634585... 0.03 OrthoFinder output from all 47 species
Ceric.23G060300.1 CRR22, Ceric.23G060300 not classified & original description: pacid=50610371... 0.03 OrthoFinder output from all 47 species
Ceric.23G076700.1 OTP84, Ceric.23G076700 not classified & original description: pacid=50610256... 0.04 OrthoFinder output from all 47 species
Ceric.34G039000.1 Ceric.34G039000 not classified & original description: pacid=50623583... 0.03 OrthoFinder output from all 47 species
Dac_g18410 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g28298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05745 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06366 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08263 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08876 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g49789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50140 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02951 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04314 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04921 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09208 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10498 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15390 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g16062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16421 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g16483 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22330 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23602 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24540 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36299 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
GSVIVT01031251001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g07979 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g03305 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06185 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08420 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11189 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12137 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40602 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_138676g0010 EMB2261 RNA editing factor (ECD1) 0.04 OrthoFinder output from all 47 species
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_470679g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_62181g0010 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_73205g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
MA_82569g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g27928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48629 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48633 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27636 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02390 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04335 MEF22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12230 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12561 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20470 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20888 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05054 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13844 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32654 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001817 No alias not classified & original description: CDS=1-3483 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002209 No alias not classified & original description: CDS=347-2416 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003613 No alias not classified & original description: CDS=279-3914 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007679 OTP86 not classified & original description: CDS=1-4497 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008323 No alias not classified & original description: CDS=476-3628 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018323 No alias not classified & original description: CDS=1-1728 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018780 No alias not classified & original description: CDS=1-2574 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0164.g024060 No alias not classified & original description: CDS=1-2526 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025786 No alias not classified & original description: CDS=42-3869 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026446 No alias not classified & original description: CDS=292-2991 0.03 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo93321 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc03g119950.1.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
Solyc07g062820.1.1 Solyc07g062820 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
Solyc09g082450.1.1 Solyc09g082450 RNA editing factor (YS1) 0.04 OrthoFinder output from all 47 species
Solyc12g096510.3.1 Solyc12g096510 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Spa_g06014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12113 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14169 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14546 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20273 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53601 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55041 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021457_P001 CRR22, Zm00001e021457 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Zm00001e023498_P001 VAC1, ECB2,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 200 222
IPR002885 Pentatricopeptide_repeat 330 359
IPR002885 Pentatricopeptide_repeat 507 528
IPR002885 Pentatricopeptide_repeat 123 171
IPR002885 Pentatricopeptide_repeat 429 476
IPR002885 Pentatricopeptide_repeat 22 68
IPR002885 Pentatricopeptide_repeat 226 272
No external refs found!