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  5. Len_g18038

Len_g18038


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18038

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003262 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g014239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g049688 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13795 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g44810 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05908 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19094 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26581 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30899 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54729 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g59722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33115 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34702.t1 Aspi01Gene34702 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023864 No alias not classified & original description: CDS=1-2211 0.04 OrthoFinder output from all 47 species
Cba_g04064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07378 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g12686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19562 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29979 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34897 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g57497 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G078100.1 OTP84, Ceric.07G078100 not classified & original description: pacid=50626860... 0.03 OrthoFinder output from all 47 species
Ceric.18G001000.1 Ceric.18G001000 not classified & original description: pacid=50621627... 0.03 OrthoFinder output from all 47 species
Ceric.28G015100.1 Ceric.28G015100 not classified & original description: pacid=50570923... 0.03 OrthoFinder output from all 47 species
Ceric.30G012500.1 Ceric.30G012500 not classified & original description: pacid=50608997... 0.03 OrthoFinder output from all 47 species
Dac_g25031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35207 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35587 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g05681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17642 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26403 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14977 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_139163g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Msp_g07853 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g02383 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05327 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g13685 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16605 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g44509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13480 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06451 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11085 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63671 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g49086 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo113974 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Spa_g21394 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26791 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27671 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30264 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53201 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04672 SLO1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g06494 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13288 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19787 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26882 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g29781 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43995 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 267 288
IPR002885 Pentatricopeptide_repeat 397 427
IPR002885 Pentatricopeptide_repeat 369 395
IPR002885 Pentatricopeptide_repeat 499 525
IPR002885 Pentatricopeptide_repeat 471 497
IPR002885 Pentatricopeptide_repeat 91 136
IPR002885 Pentatricopeptide_repeat 293 339
IPR002885 Pentatricopeptide_repeat 190 237
No external refs found!