1. Home
  2. Species
  3. Lindsaea ensifolia
  4. Sequence
  5. Len_g18053

Len_g18053


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18053

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.02 OrthoFinder output from all 47 species
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G24000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g024582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13258 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13967 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17512 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06729 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000731 No alias not classified & original description: CDS=1-3192 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008858 No alias not classified & original description: CDS=1-2760 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063377 OTP86 not classified & original description: CDS=1-2337 0.01 OrthoFinder output from all 47 species
Azfi_s1107.g097662 No alias not classified & original description: CDS=1-2811 0.03 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17193 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G100100.1 Ceric.04G100100 not classified & original description: pacid=50630537... 0.03 OrthoFinder output from all 47 species
Ceric.05G085300.1 Ceric.05G085300 not classified & original description: pacid=50578726... 0.02 OrthoFinder output from all 47 species
Ceric.22G079200.1 OTP84, Ceric.22G079200 not classified & original description: pacid=50615391... 0.03 OrthoFinder output from all 47 species
Ceric.24G026700.1 Ceric.24G026700 not classified & original description: pacid=50628649... 0.02 OrthoFinder output from all 47 species
Ceric.30G001600.1 Ceric.30G001600 not classified & original description: pacid=50608965... 0.03 OrthoFinder output from all 47 species
Dac_g07482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007972001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.01 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Nbi_g20343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g43844 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g05953 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g18881 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008151 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011560 No alias not classified & original description: CDS=661-2424 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385 No alias not classified & original description: CDS=1-1908 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026676 No alias not classified & original description: CDS=1-2475 0.03 OrthoFinder output from all 47 species
Sam_g16664 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g49275 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g04113 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g08973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09800 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 430 476
IPR002885 Pentatricopeptide_repeat 532 578
IPR002885 Pentatricopeptide_repeat 327 374
IPR002885 Pentatricopeptide_repeat 226 272
IPR002885 Pentatricopeptide_repeat 404 429
IPR002885 Pentatricopeptide_repeat 608 633
IPR002885 Pentatricopeptide_repeat 505 528
No external refs found!