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  5. Len_g18541

Len_g18541


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18541

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
Aev_g49175 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12481 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19052 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g47260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61086 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10785 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11093 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27898 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g24623 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41783.t1 Aspi01Gene41783 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05792 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g68955 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G040300.1 Ceric.08G040300 not classified & original description: pacid=50638085... 0.03 OrthoFinder output from all 47 species
Dac_g03990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g48675 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28521 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09249 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12280 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17407 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12890 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17070 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g10348 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11120 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43666 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g56599 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57818 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007452 No alias not classified & original description: CDS=1-2322 0.04 OrthoFinder output from all 47 species
Sam_g06558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35469 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo101093 EMB2261 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo173139 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g23933 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17150 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007462_P001 Zm00001e007462 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 497 528
IPR002885 Pentatricopeptide_repeat 226 272
IPR002885 Pentatricopeptide_repeat 327 374
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 430 477
IPR002885 Pentatricopeptide_repeat 404 427
IPR002885 Pentatricopeptide_repeat 200 222
No external refs found!