Aliases : OTP84
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00092p00078040 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00099p00097640 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g39530... | 0.02 | OrthoFinder output from all 47 species | |
| AT4G25270 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G52630 | MEF1 | mitochondrial RNAediting factor 1 | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g066055 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g07273 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g12661 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g05867 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene00588.t1 | Aspi01Gene00588 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene22419.t1 | Aspi01Gene22419 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene22525.t1 | REME1, Aspi01Gene22525 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene29888.t1 | Aspi01Gene29888 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene34952.t1 | Aspi01Gene34952 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene36242.t1 | VAC1, ECB2,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene72589.t1 | MEF22, Aspi01Gene72589 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0003.g007676 | No alias | not classified & original description: CDS=1-2364 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0004.g008403 | EMB2758 | not classified & original description: CDS=1-1560 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011342 | No alias | not classified & original description: CDS=1-1953 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0009.g011901 | No alias | not classified & original description: CDS=1-1638 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0049.g030697 | No alias | not classified & original description: CDS=1-2361 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0069.g036571 | No alias | not classified & original description: CDS=1-1638 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0134.g049391 | No alias | not classified & original description: CDS=1-2007 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0345.g065835 | No alias | not classified & original description: CDS=1-1926 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0999.g094975 | No alias | not classified & original description: CDS=29-2698 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g34428 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.02G049700.1 | Ceric.02G049700 | not classified & original description: pacid=50584245... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.12G016200.1 | Ceric.12G016200 | not classified & original description: pacid=50601153... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g02726 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g25037 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_179801g0020 | EMB2261 | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| MA_55967g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| MA_6511g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g03151 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g03763 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g34503 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g03854 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g44738 | VAC1, ECB2, ATECB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g15973 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g15285 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g03779 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g11913 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g29927 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g30171 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g39339 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g05561 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 383 | 431 |
| IPR002885 | Pentatricopeptide_repeat | 484 | 532 |
| IPR002885 | Pentatricopeptide_repeat | 79 | 124 |
| IPR002885 | Pentatricopeptide_repeat | 281 | 327 |
| IPR002885 | Pentatricopeptide_repeat | 180 | 226 |
| IPR002885 | Pentatricopeptide_repeat | 53 | 74 |
| IPR002885 | Pentatricopeptide_repeat | 154 | 177 |
| IPR002885 | Pentatricopeptide_repeat | 255 | 278 |
| IPR002885 | Pentatricopeptide_repeat | 562 | 584 |
| IPR002885 | Pentatricopeptide_repeat | 357 | 379 |
| No external refs found! |
