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  5. Len_g18599

Len_g18599


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18599

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00176600 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT1G56690 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G15720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g015952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016118 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g019220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g041090 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04109 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14520 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24367 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24667 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30597 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31182 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05088 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06803 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07262 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09957 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g14743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16091 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g16416 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22752 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26267 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g27948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30496 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g47378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09609 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33585 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38034 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene08600.t1 Aspi01Gene08600 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46609.t1 CRR22, Aspi01Gene46609 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06836 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07323 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19059 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g21419 EMB2744 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g26306 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29847 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29910 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g37951 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g45942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67793 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G053600.1 Ceric.01G053600 not classified & original description: pacid=50592089... 0.04 OrthoFinder output from all 47 species
Ceric.02G033100.1 Ceric.02G033100 not classified & original description: pacid=50586102... 0.03 OrthoFinder output from all 47 species
Ceric.02G042700.1 Ceric.02G042700 not classified & original description: pacid=50584264... 0.06 OrthoFinder output from all 47 species
Ceric.04G040300.1 CRR22, Ceric.04G040300 not classified & original description: pacid=50630674... 0.05 OrthoFinder output from all 47 species
Ceric.04G078900.1 Ceric.04G078900 not classified & original description: pacid=50631863... 0.03 OrthoFinder output from all 47 species
Ceric.11G086200.1 OTP84, Ceric.11G086200 not classified & original description: pacid=50595902... 0.03 OrthoFinder output from all 47 species
Ceric.12G028500.1 CRR22, Ceric.12G028500 not classified & original description: pacid=50602410... 0.03 OrthoFinder output from all 47 species
Ceric.13G001600.1 Ceric.13G001600 not classified & original description: pacid=50636694... 0.03 OrthoFinder output from all 47 species
Ceric.13G076400.1 Ceric.13G076400 not classified & original description: pacid=50635248... 0.03 OrthoFinder output from all 47 species
Ceric.1Z003200.1 Ceric.1Z003200 not classified & original description: pacid=50628145... 0.04 OrthoFinder output from all 47 species
Ceric.1Z148300.1 Ceric.1Z148300 not classified & original description: pacid=50637132... 0.04 OrthoFinder output from all 47 species
Ceric.22G079200.1 OTP84, Ceric.22G079200 not classified & original description: pacid=50615391... 0.03 OrthoFinder output from all 47 species
Ceric.24G026700.1 Ceric.24G026700 not classified & original description: pacid=50628649... 0.03 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.04 OrthoFinder output from all 47 species
Ceric.28G059600.1 OTP84, Ceric.28G059600 not classified & original description: pacid=50569965... 0.04 OrthoFinder output from all 47 species
Ceric.28G068300.1 DOT4, Ceric.28G068300 not classified & original description: pacid=50570176... 0.03 OrthoFinder output from all 47 species
Ceric.38G015500.1 Ceric.38G015500 not classified & original description: pacid=50579581... 0.03 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.04 OrthoFinder output from all 47 species
Dac_g16108 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18426 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05677 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g07152 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g08971 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g11166 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g44864 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46754 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22352 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49915 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
LOC_Os01g58630.1 LOC_Os01g58630 Pentatricopeptide repeat-containing protein At5g15300... 0.03 OrthoFinder output from all 47 species
Len_g04783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g41161 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06202 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Msp_g28341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g32360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g38951 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20192 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63651 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05592 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g39647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53939 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55034 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001288 No alias not classified & original description: CDS=1-3081 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002787 No alias not classified & original description: CDS=1-2232 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002944 No alias not classified & original description: CDS=1-2634 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006214 No alias not classified & original description: CDS=115-2940 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014007 No alias not classified & original description: CDS=1-1872 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014379 CRR22 not classified & original description: CDS=1-2430 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017584 No alias not classified & original description: CDS=1-3165 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018386 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2118 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019669 OTP84 not classified & original description: CDS=1-1971 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023714 No alias not classified & original description: CDS=1-2772 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026755 CRR22 not classified & original description: CDS=1-2307 0.03 OrthoFinder output from all 47 species
Smo111982 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.05 OrthoFinder output from all 47 species
Smo70138 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
Spa_g06005 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g06160 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g18196 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18780 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g19043 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g25999 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g30214 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g39327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50395 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53601 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 586 632
IPR002885 Pentatricopeptide_repeat 77 122
IPR002885 Pentatricopeptide_repeat 688 734
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 381 428
IPR002885 Pentatricopeptide_repeat 177 225
IPR002885 Pentatricopeptide_repeat 483 530
IPR002885 Pentatricopeptide_repeat 791 838
IPR002885 Pentatricopeptide_repeat 458 482
IPR002885 Pentatricopeptide_repeat 558 584
IPR002885 Pentatricopeptide_repeat 858 889
No external refs found!