Len_g18885


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18885

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00017p00256920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
Adi_g003796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040937 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082577 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096783 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g105303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18197 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42377 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18507 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29210 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g38666 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61086 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27898 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28486 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g39230 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68927 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16353.t1 Aspi01Gene16353 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67429.t1 Aspi01Gene67429 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0264.g060909 EMB2758 not classified & original description: CDS=1-2373 0.02 OrthoFinder output from all 47 species
Cba_g19052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g44509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G069300.1 OTP86, Ceric.09G069300 not classified & original description: pacid=50588354... 0.04 OrthoFinder output from all 47 species
Ceric.38G035700.1 Ceric.38G035700 not classified & original description: pacid=50579678... 0.02 OrthoFinder output from all 47 species
Dac_g02877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g03777 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g17048 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g36036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26802 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g49796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15529 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15555 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g26344 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g35700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g45840.1 LOC_Os01g45840 Pentatricopeptide repeat-containing protein At2g36730... 0.03 OrthoFinder output from all 47 species
LOC_Os06g20870.1 LOC_Os06g20870 Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
Len_g04345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06634 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06715 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07374 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25262 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33029 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_858608g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17003 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24060 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27543 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g41721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20147 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23526 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29069 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41731 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07329 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13386 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12889 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30610 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03921 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04648 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g23589 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32866 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009076 No alias not classified & original description: CDS=1-1737 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385 No alias not classified & original description: CDS=1-1908 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016028 No alias ssDNA-binding protein *(OSB) & original description: CDS=1-717 0.03 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo75659 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Solyc03g025700.2.1 Solyc03g025700 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g07054 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24095 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06622 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07829 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17885 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26898 EMB2758 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 358 383
IPR002885 Pentatricopeptide_repeat 78 124
IPR002885 Pentatricopeptide_repeat 179 227
IPR002885 Pentatricopeptide_repeat 384 430
IPR002885 Pentatricopeptide_repeat 281 328
No external refs found!