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  5. Len_g18947

Len_g18947


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18947
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.04 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
Adi_g003303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04109 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07468 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16037 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16609 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30728 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18251 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19114 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19294 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g27948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55316 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07081 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g52616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14575.t1 Aspi01Gene14575 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14821.t1 CRR2, Aspi01Gene14821 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20498.t1 CRR2, Aspi01Gene20498 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34799.t1 Aspi01Gene34799 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39631.t1 CRR2, Aspi01Gene39631 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41675.t1 CRR2, Aspi01Gene41675 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43949.t1 OTP84, Aspi01Gene43949 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene51735.t1 Aspi01Gene51735 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene64478.t1 EMB2758, Aspi01Gene64478 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68781.t1 MEF21, Aspi01Gene68781 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71026.t1 Aspi01Gene71026 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000887 No alias not classified & original description: CDS=1-1611 0.04 OrthoFinder output from all 47 species
Azfi_s0059.g034666 No alias not classified & original description: CDS=1-1770 0.03 OrthoFinder output from all 47 species
Cba_g06563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06576 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g33742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g69088 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.12G036800.1 Ceric.12G036800 not classified & original description: pacid=50601765... 0.03 OrthoFinder output from all 47 species
Ceric.29G083600.1 Ceric.29G083600 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g28298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35824 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02806 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28518 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g41188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g52150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.04 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.02 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
LOC_Os11g29230.1 CRR22, LOC_Os11g29230 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Len_g18318 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05665 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07580 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09949 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28067 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10338179g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Msp_g25303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27639 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09876 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15249 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40238 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43235 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01673 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03406 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63825 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29961 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06906 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39273 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59346 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003060 No alias not classified & original description: CDS=1-2058 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003586 REME1 not classified & original description: CDS=134-1198 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009138 No alias component *(NRPC16/RPC34) of TFIIIe transcription factor... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011560 No alias not classified & original description: CDS=661-2424 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013077 No alias not classified & original description: CDS=1-438 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014492 No alias not classified & original description: CDS=1-2247 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015038 CRR22 not classified & original description: CDS=1-1620 0.03 OrthoFinder output from all 47 species
Sam_g03180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g069500.1.1 Solyc02g069500 Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
Spa_g24639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47634 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20839 LOI1, MEF11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g45966 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 380 428
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 483 529
IPR002885 Pentatricopeptide_repeat 177 223
IPR002885 Pentatricopeptide_repeat 74 121
IPR002885 Pentatricopeptide_repeat 558 583
IPR002885 Pentatricopeptide_repeat 354 379
IPR002885 Pentatricopeptide_repeat 51 73
IPR002885 Pentatricopeptide_repeat 253 276
No external refs found!