Aliases : VAC1, ECB2, ATECB2
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00004p00076010 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G53600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g005224 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g005787 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g043352 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g066076 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g066611 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g079910 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g082454 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g21708 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g25067 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g29185 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06921 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g03141 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g03840 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g04222 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g06390 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06398 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07375 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g09306 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18201 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g22752 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g26632 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30496 | OSB1 | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g30730 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g30736 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g31230 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g47378 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g54765 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0043.g026960 | No alias | not classified & original description: CDS=1-4971 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0054.g033714 | CRR22 | not classified & original description: CDS=1-1803 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07194 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g20506 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g20710 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g29852 | EMB2758 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g37951 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.11G015200.1 | Ceric.11G015200 | not classified & original description: pacid=50595684... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.13G069100.1 | CRR22, Ceric.13G069100 | not classified & original description: pacid=50635982... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001657.6 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g11166 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g22670 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g36357 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g44864 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g45907 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g46372 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g46754 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g18277 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01029885001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_27891 | OTP86 | RNA editing factor (OTP86) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_38292 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g41120.1 | LOC_Os04g41120 | Pentatricopeptide repeat-containing protein At4g38010... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g05407 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g18296 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g26486 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g37832 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g12137 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_139163g0010 | CRR22 | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| MA_27138g0010 | No alias | RNA editing factor (MEF7) | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g01896 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g06871 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g20793 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g06450 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g15182 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0008.g004186 | No alias | not classified & original description: CDS=1-2421 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g11900 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g51263 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo131170 | VAC1, ECB2, ATECB2 | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g065410.3.1 | CRR22, Solyc02g065410 | Pentatricopeptide repeat-containing protein At1g20230... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g23793 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e008200_P001 | Zm00001e008200 | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | HCCA |
| MF | GO:0003972 | RNA ligase (ATP) activity | IEP | HCCA |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| MF | GO:0008452 | RNA ligase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 430 | 477 |
| IPR002885 | Pentatricopeptide_repeat | 124 | 170 |
| IPR002885 | Pentatricopeptide_repeat | 328 | 375 |
| IPR002885 | Pentatricopeptide_repeat | 227 | 273 |
| IPR002885 | Pentatricopeptide_repeat | 21 | 68 |
| IPR002885 | Pentatricopeptide_repeat | 98 | 120 |
| IPR002885 | Pentatricopeptide_repeat | 200 | 222 |
| No external refs found! |
