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  5. Len_g20588

Len_g20588


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20588

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00170820 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT3G56580 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g13947 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26879 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021017.21 No alias No description available 0.01 OrthoFinder output from all 47 species
Dde_g16758 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g24418 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Gb_10869 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_26865 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g38060.1 LOC_Os08g38060 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os12g02620.1 LOC_Os12g02620 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.01 OrthoFinder output from all 47 species
Pir_g50355 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011589 No alias not classified & original description: CDS=1-987 0.04 OrthoFinder output from all 47 species
Sam_g09915 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo8109 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc12g008440.1.1 Solyc12g008440 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g12997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15447 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g35084 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e023449_P001 Zm00001e023449 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Zm00001e024003_P001 Zm00001e024003 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 194 236
IPR039525 RNF126-like_zinc-ribbon 7 38
No external refs found!