Description : component *(uS9) of small ribosomal-subunit (SSU) proteome & original description: none
Gene families : OG0002224 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002224_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aop_g00146 | No alias | component *(uS9) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000123.14 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Cre13.g573351 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01017923001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Mp1g14290.1 | No alias | component RPS16 of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c19_22410V3.1 | Pp3c19_22410 | Ribosomal protein S5 domain 2-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c21_20630V3.1 | Pp3c21_20630 | Ribosomal protein S5 domain 2-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c9_4180V3.1 | Pp3c9_4180 | Ribosomal protein S5 domain 2-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g068530.3.1 | Solyc01g068530 | component RPS16 of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g026100.1.1 | Solyc04g026100 | component RPS16 of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g005690.1.1 | Solyc05g005690 | component RPS16 of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g12571 | No alias | component *(uS9) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000754 | Ribosomal_S9 | 48 | 180 |
| No external refs found! |
