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  5. Len_g22115

Len_g22115


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g22115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g054784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15384 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Nbi_g02394 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g43133 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g077520.3.1 RBP1, ATRBP1,... RNA-binding protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0051879 Hsp90 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 106 175
IPR000504 RRM_dom 19 82
No external refs found!