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  5. Len_g23833

Len_g23833


Description : not classified & original description: none


Gene families : OG0000180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g23833

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00122370 evm_27.TU.AmTr_v1... Cell wall.hemicellulose.xyloglucan.synthesis.xyloglucan... 0.02 OrthoFinder output from all 47 species
AT2G32740 ATGT13, GT13 galactosyltransferase 13 0.03 OrthoFinder output from all 47 species
AT5G62220 GT18, ATGT18 glycosyltransferase 18 0.02 OrthoFinder output from all 47 species
Adi_g017997 GT18, ATGT18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079275 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32287 MUR3, KAM1 1,2-beta-galactosyltransferase *(MUR3-like) & original... 0.03 OrthoFinder output from all 47 species
Cba_g25028 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11589 MUR3, KAM1 1,2-beta-galactosyltransferase *(MUR3-like) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g12520 GT18, ATGT18 galactosyltransferase *(XLT2) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26388 MUR3, KAM1 1,2-beta-galactosyltransferase *(MUR3-like) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os03g05110.1 MUR3, KAM1,... UDP-galactose-dependent 1,2-beta-galactosyltransferase 0.04 OrthoFinder output from all 47 species
LOC_Os10g32170.1 MUR3, KAM1,... Xyloglucan galactosyltransferase KATAMARI1 homolog... 0.02 OrthoFinder output from all 47 species
MA_10428118g0010 No alias Probable xyloglucan galactosyltransferase GT19... 0.02 OrthoFinder output from all 47 species
MA_2898973g0010 No alias Probable xyloglucan galactosyltransferase GT19... 0.02 OrthoFinder output from all 47 species
Nbi_g02122 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16473 MUR3, KAM1 1,2-beta-galactosyltransferase *(MUR3-like) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g44153 GT18, ATGT18 galactosyltransferase *(XLT2) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0083.g018133 No alias not classified & original description: CDS=1-1707 0.03 OrthoFinder output from all 47 species
Spa_g04915 GT18, ATGT18 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000041_P001 Zm00001e000041 Probable xyloglucan galactosyltransferase GT19... 0.02 OrthoFinder output from all 47 species
Zm00001e037897_P001 Zm00001e037897 Probable xyloglucan galactosyltransferase GT19... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR040911 Exostosin_GT47 99 448
No external refs found!