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  5. Len_g28209

Len_g28209 (STK, AGL11)


Aliases : STK, AGL11

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g28209
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00254030 SHP2, AGL5,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Ala_g07724 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g44649 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04227 AGL18 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0062.g035272 AGL16 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01009171001 SVP, AGL22 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Gb_16301 STK, AGL11 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g01355.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os03g11614.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g23980.1 AGL16, LOC_Os06g23980 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Lfl_g31128 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10332736g0010 STK, AGL11 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_10432817g0010 SVP, AGL22 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_138440g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_16629g0010 ANR1, AGL44 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Ore_g04651 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 156 241
IPR002100 TF_MADSbox 82 129
No external refs found!