Len_g28666 (AtRABA5d, RABA5d)

Aliases : AtRABA5d, RABA5d

Description : not classified & original description: none

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g28666
Cluster	HCCA: Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00103890	AtRABA6b,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
AT2G33870	ArRABA1h	RAB GTPase homolog A1H	0.02	OrthoFinder output from all 47 species
Aev_g09261	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01569	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0056.g034200	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=99-740	0.02	OrthoFinder output from all 47 species
Dac_g27746	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g03218	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g03286	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05302	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os05g20050.1	RAB-A2C,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os08g41340.1	AtRABA5d,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os09g15790.1	AtRABA1f,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
MA_113056g0010	AtRABA5a, RABA5a	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Msp_g05544	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g09974	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g04633	RABA2b,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g39855	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g04295	AtRABA5b, RABA5b	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g14192	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g03300	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g00826	RABA2b,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g08711	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g09438	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009470	ATRABA2A,...	A-class RAB GTPase & original description: CDS=131-796	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013006	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=103-753	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026297	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=308-952	0.03	OrthoFinder output from all 47 species
Solyc03g079900.3.1	RABA2b,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Solyc06g076450.3.1	RABA2b,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Spa_g12437	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g02396	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e020213_P001	AtRABA1f,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e027669_P001	ATRABA2A,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	14	140

External Links

No external refs found!

Len_g28666 (AtRABA5d, RABA5d)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation