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  5. Len_g32688

Len_g32688


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g32688

Target Alias Description ECC score Gene Family Method Actions
Adi_g005224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g025728 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033179 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g035357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12663 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12943 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07955 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29803 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02659 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17754 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26838 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70377 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70598 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02568.t1 Aspi01Gene02568 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06826.t1 CRR2, Aspi01Gene06826 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08082.t1 EMB2261, Aspi01Gene08082 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10220.t1 OTP84, Aspi01Gene10220 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14090.t1 Aspi01Gene14090 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26329.t1 Aspi01Gene26329 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26812.t1 Aspi01Gene26812 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28168.t1 Aspi01Gene28168 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29888.t1 Aspi01Gene29888 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34702.t1 Aspi01Gene34702 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34713.t1 Aspi01Gene34713 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34811.t1 Aspi01Gene34811 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34952.t1 Aspi01Gene34952 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40915.t1 CRR22, Aspi01Gene40915 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene41379.t1 Aspi01Gene41379 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52586.t1 Aspi01Gene52586 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70770.t1 Aspi01Gene70770 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011901 No alias not classified & original description: CDS=1-1638 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036571 No alias not classified & original description: CDS=1-1638 0.03 OrthoFinder output from all 47 species
Azfi_s0251.g060294 No alias not classified & original description: CDS=1-879 0.02 OrthoFinder output from all 47 species
Cba_g07786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25572 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g37750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G049700.1 Ceric.02G049700 not classified & original description: pacid=50584245... 0.03 OrthoFinder output from all 47 species
Ceric.05G039500.1 Ceric.05G039500 not classified & original description: pacid=50577997... 0.04 OrthoFinder output from all 47 species
Ceric.05G079500.1 Ceric.05G079500 not classified & original description: pacid=50579193... 0.04 OrthoFinder output from all 47 species
Ceric.10G007000.1 Ceric.10G007000 not classified & original description: pacid=50613077... 0.04 OrthoFinder output from all 47 species
Ceric.10G013000.1 EMB2758, Ceric.10G013000 not classified & original description: pacid=50613337... 0.02 OrthoFinder output from all 47 species
Ceric.10G047400.1 OTP84, Ceric.10G047400 not classified & original description: pacid=50612794... 0.06 OrthoFinder output from all 47 species
Ceric.10G069100.1 Ceric.10G069100 not classified & original description: pacid=50612724... 0.04 OrthoFinder output from all 47 species
Ceric.12G016200.1 Ceric.12G016200 not classified & original description: pacid=50601153... 0.02 OrthoFinder output from all 47 species
Ceric.12G030100.1 Ceric.12G030100 not classified & original description: pacid=50600629... 0.03 OrthoFinder output from all 47 species
Ceric.13G057700.1 Ceric.13G057700 not classified & original description: pacid=50635307... 0.04 OrthoFinder output from all 47 species
Ceric.19G000700.1 VAC1, ECB2,... not classified & original description: pacid=50576122... 0.04 OrthoFinder output from all 47 species
Ceric.26G053700.1 Ceric.26G053700 not classified & original description: pacid=50599734... 0.03 OrthoFinder output from all 47 species
Ceric.28G026700.1 Ceric.28G026700 not classified & original description: pacid=50570188... 0.05 OrthoFinder output from all 47 species
Ceric.30G012500.1 Ceric.30G012500 not classified & original description: pacid=50608997... 0.04 OrthoFinder output from all 47 species
Ceric.34G009900.1 Ceric.34G009900 not classified & original description: pacid=50623876... 0.04 OrthoFinder output from all 47 species
Dac_g03990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18422 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g28556 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07745 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23388 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36401 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51083 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04416 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12053 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17702 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023818001 CRR28 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
LOC_Os01g01115.1 LOC_Os01g01115 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g01382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05389 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18591 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g20943 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g23208 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33765 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g34151 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g49951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_102449g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28692 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g30310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46064 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48060 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04968 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06257 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10320 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24651 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27843 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03470 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05592 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53018 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15290 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13320 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19174 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20089 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21831 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22636 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30131 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 530 558
IPR002885 Pentatricopeptide_repeat 97 122
IPR002885 Pentatricopeptide_repeat 327 357
IPR002885 Pentatricopeptide_repeat 198 220
IPR002885 Pentatricopeptide_repeat 226 256
IPR002885 Pentatricopeptide_repeat 630 657
IPR002885 Pentatricopeptide_repeat 802 827
IPR002885 Pentatricopeptide_repeat 601 627
IPR002885 Pentatricopeptide_repeat 299 319
IPR002885 Pentatricopeptide_repeat 24 54
IPR002885 Pentatricopeptide_repeat 123 169
IPR002885 Pentatricopeptide_repeat 727 774
IPR002885 Pentatricopeptide_repeat 425 471
No external refs found!