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  5. Len_g38929

Len_g38929


Description : not classified & original description: none


Gene families : OG0000106 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000106_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g38929

Target Alias Description ECC score Gene Family Method Actions
Adi_g107617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18884 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g00226 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g21929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g63690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08800 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g10126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10405.t1 Aspi01Gene10405 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19707.t1 Aspi01Gene19707 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19715.t1 Aspi01Gene19715 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19717.t1 Aspi01Gene19717 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19718.t1 Aspi01Gene19718 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65012.t1 Aspi01Gene65012 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063424 No alias not classified & original description: CDS=449-994 0.03 OrthoFinder output from all 47 species
Dac_g34970 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g44478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_12742 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_18966 No alias no description available(sp|q53jf7|asr5_orysj : 98.2) 0.01 OrthoFinder output from all 47 species
LOC_Os01g72910.1 LOC_Os01g72910 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g22283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g39226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10261412g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_666523g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9522735g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g01970.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g02030.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g13104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14315 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g34184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g31766 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g071600.3.1 Solyc04g071600 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR003496 ABA_WDS 45 119
No external refs found!