Len_g39844 (PGP11)

Aliases : PGP11

Description : subfamily ABCB transporter & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g39844
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
Ceric.14G054100.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.04	OrthoFinder output from all 47 species
LOC_Os01g50070.1	LOC_Os01g50070	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os02g21750.1	PGP11, LOC_Os02g21750	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e025063_P001	Zm00001e025063	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	80	228
IPR011527	ABC1_TM_dom	416	688
IPR003439	ABC_transporter-like_ATP-bd	755	905

External Links

No external refs found!