Len_g41552

Description : not classified & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g41552
Cluster	HCCA: Cluster_136

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00153p00035720	ATPUB17, PUB17,...	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	OrthoFinder output from all 47 species
AT1G10560	PUB18, ATPUB18	plant U-box 18	0.03	OrthoFinder output from all 47 species
Aev_g03944	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06664	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16594	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cre03.g178550	No alias	Dynein assembly factor with WDR repeat domains 1...	0.01	OrthoFinder output from all 47 species
Dcu_g15895	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02285	ATPUB17, PUB17	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Gb_24088	PUB9, ATPUB9	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Gb_24091	PUB9, ATPUB9	U-box domain-containing protein 14 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os08g32060.1	LOC_Os08g32060	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Lfl_g30685	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_69133g0010	PUB14, ATPUB14	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Pir_g00381	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc03g114160.1.1	Solyc03g114160	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Zm00001e001174_P001	PUB13, ATPUB13,...	E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Zm00001e013323_P001	PUB15, Zm00001e013323	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e018578_P001	Zm00001e018578	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e028839_P001	Zm00001e028839	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	313	383

External Links

No external refs found!

Len_g41552

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation