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  5. Len_g45877

Len_g45877 (UBP23)


Aliases : UBP23

Description : deubiquitinase *(UBP23) & original description: none


Gene families : OG0000320 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000320_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g45877

Target Alias Description ECC score Gene Family Method Actions
AT3G14400 UBP25 ubiquitin-specific protease 25 0.05 OrthoFinder output from all 47 species
AT4G24560 UBP16 ubiquitin-specific protease 16 0.04 OrthoFinder output from all 47 species
AT5G57990 UBP23 ubiquitin-specific protease 23 0.02 OrthoFinder output from all 47 species
Adi_g013897 UBP25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013898 UBP25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060737 UBP23 deubiquitinase *(UBP23) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g098237 UBP18 deubiquitinase *(UBP15-21) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09377 UBP23 deubiquitinase *(UBP23) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08916 UBP23 deubiquitinase *(UBP23) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19936 UBP25 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g11746 UBP25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01298 UBP25 deubiquitinase *(UBP25) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.22G015900.1 UBP25, Ceric.22G015900 not classified & original description: pacid=50613832... 0.04 OrthoFinder output from all 47 species
Dac_g01006 UBP25 deubiquitinase *(UBP25) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03145 UBP18 deubiquitinase *(UBP15-21) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09670 UBP25 deubiquitinase *(UBP25) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26398 UBP23 deubiquitinase *(UBP23) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000696001 UBP15 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
GSVIVT01001911001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01001912001 UBP23 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
GSVIVT01033166001 UBP18 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
GSVIVT01038082001 UBP25 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
Gb_30872 UBP23 deubiquitinase (UBP23) 0.04 OrthoFinder output from all 47 species
Gb_38396 UBP18 deubiquitinase (UBP15-21) 0.03 OrthoFinder output from all 47 species
LOC_Os02g14730.1 UBP15, LOC_Os02g14730 deubiquitinase (UBP15-21) 0.02 OrthoFinder output from all 47 species
LOC_Os05g43480.1 UBP25, LOC_Os05g43480 deubiquitinase (UBP25) 0.03 OrthoFinder output from all 47 species
LOC_Os09g28940.1 UBP17, LOC_Os09g28940 deubiquitinase (UBP15-21) 0.02 OrthoFinder output from all 47 species
MA_10429414g0020 UBP18 deubiquitinase (UBP15-21) 0.05 OrthoFinder output from all 47 species
MA_53569g0010 UBP23 deubiquitinase (UBP23) 0.02 OrthoFinder output from all 47 species
Mp2g05560.1 UBP18 deubiquitinase (UBP15-21) 0.04 OrthoFinder output from all 47 species
Mp3g16110.1 UBP23 deubiquitinase (UBP23) 0.03 OrthoFinder output from all 47 species
Ore_g09620 UBP18 deubiquitinase *(UBP15-21) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27850 UBP23 deubiquitinase *(UBP23) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15722 UBP19 deubiquitinase *(UBP15-21) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08769 UBP25 deubiquitinase *(UBP25) & original description: none 0.03 OrthoFinder output from all 47 species
Smo420048 UBP18 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
Solyc04g076210.3.1 UBP16, Solyc04g076210 deubiquitinase (UBP15-21) 0.05 OrthoFinder output from all 47 species
Solyc08g069050.3.1 UBP19, Solyc08g069050 deubiquitinase (UBP15-21) 0.03 OrthoFinder output from all 47 species
Spa_g23775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26124 UBP23 deubiquitinase *(UBP23) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e024878_P003 UBP15, Zm00001e024878 deubiquitinase (UBP15-21) 0.03 OrthoFinder output from all 47 species
Zm00001e027381_P003 UBP25, Zm00001e027381 deubiquitinase (UBP25) 0.04 OrthoFinder output from all 47 species
Zm00001e030428_P001 UBP19, Zm00001e030428 deubiquitinase (UBP15-21) 0.03 OrthoFinder output from all 47 species
Zm00001e032099_P001 UBP25, Zm00001e032099 deubiquitinase (UBP25) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 101 400
No external refs found!