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  5. Len_g55433

Len_g55433 (CAB4, LHCA4)


Aliases : CAB4, LHCA4

Description : component *(LHCa4) of LHC-I complex & original description: none


Gene families : OG0000742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g55433
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264770 CAB4, LHCA4,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from all 47 species
AMTR_s00013p00180670 LHCA2,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from all 47 species
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.05 OrthoFinder output from all 47 species
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.05 OrthoFinder output from all 47 species
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.03 OrthoFinder output from all 47 species
Adi_g001938 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113731 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05867 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08180 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g00983 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08832 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01073 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13138 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21835 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21836 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36261 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37279.t1 LHCA2, Aspi01Gene37279 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44141.t1 LHCA2, Aspi01Gene44141 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61720.t1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65950.t1 LHCA2, Aspi01Gene65950 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013231 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G094100.1 LHCA2, Ceric.12G094100 not classified & original description: pacid=50600668... 0.04 OrthoFinder output from all 47 species
Ceric.21G064400.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.02 OrthoFinder output from all 47 species
Ceric.22G073900.1 LHCA2, Ceric.22G073900 component *(LHCa2) of LHC-I complex & original... 0.02 OrthoFinder output from all 47 species
Ceric.28G031700.1 LHCA2, Ceric.28G031700 component *(LHCa2) of LHC-I complex & original... 0.02 OrthoFinder output from all 47 species
Ceric.33G037200.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.05 OrthoFinder output from all 47 species
Cre06.g272650 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.01 OrthoFinder output from all 47 species
Cre06.g278213 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.01 OrthoFinder output from all 47 species
Cre10.g425900 CAB4, LHCA4 Chlorophyll a-b binding protein 4, chloroplastic... 0.01 OrthoFinder output from all 47 species
Cre10.g452050 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.01 OrthoFinder output from all 47 species
Cre16.g687900 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.01 OrthoFinder output from all 47 species
Dac_g08113 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g29671 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g34548 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20973 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Gb_08408 CAB4, LHCA4 component LHCa4 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Gb_32082 LHCA2 component LHCa2 of LHC-I complex 0.02 OrthoFinder output from all 47 species
LOC_Os07g38960.1 LHCA2, LOC_Os07g38960 component LHCa2 of LHC-I complex 0.02 OrthoFinder output from all 47 species
LOC_Os08g33820.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Len_g09864 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12015 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
MA_65346g0010 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.02 OrthoFinder output from all 47 species
Mp3g07840.1 CAB4, LHCA4 component LHCa4 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Mp8g13180.1 LHCA2 component LHCa2 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Msp_g23129 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43266 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43267 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c20_23240V3.1 LHCA2, Pp3c20_23240 photosystem I light harvesting complex gene 2 0.01 OrthoFinder output from all 47 species
Sam_g10927 No alias component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16961 No alias component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g40409 No alias component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Smo270427 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from all 47 species
Smo446130 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.07 OrthoFinder output from all 47 species
Solyc03g115900.4.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Solyc06g069730.3.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Solyc10g006230.3.1 LHCA2, Solyc10g006230 component LHCa2 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Spa_g11550 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13077 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04383 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10537 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004129_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Zm00001e022453_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Zm00001e035349_P002 LHCA2, Zm00001e035349 component LHCa2 of LHC-I complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 63 222
No external refs found!