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  5. Len_g56388

Len_g56388 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Len_g56388

Target Alias Description ECC score Gene Family Method Actions
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
GSVIVT01002442001 AGL24 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
MA_138440g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_13933g0010 AGL13 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_18048g0010 AGL21 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_51624g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Ore_g43918 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g093960.3.1 AGL6, Solyc01g093960 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002487 TF_Kbox 72 137
IPR002100 TF_MADSbox 2 42
No external refs found!