Len_g56473

Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g56473
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00055110	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Adi_g086977	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ala_g00515	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g09246	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g28969	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aob_g08130	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aob_g18441	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g18177	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0052.g031601	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g17074	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cba_g32123	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cre02.g083950	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Dac_g02540	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g13740	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g06384	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g02667	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
MA_19834g0010	No alias	component psPSRP3 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Nbi_g11760	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ore_g26894	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pir_g18227	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ppi_g18636	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ppi_g21764	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Spa_g06637	No alias	component *(cS23) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Zm00001e007903_P001	Zm00001e007903	component psPSRP3 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006924	Ribosomal_PSRP3/Ycf65	133	179

External Links

No external refs found!

Len_g56473

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation