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  5. Len_g57308

Len_g57308 (EMB2758)


Aliases : EMB2758

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g57308
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Adi_g003868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007512 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g044582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099122 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g114947 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g118106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17219 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g26568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32791 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30496 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g30837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31230 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g11250 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16738 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g27127 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g28679 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g33558 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g62612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g63229 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g67878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g20506 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g37951 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g44878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g30472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11166 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g36357 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g44864 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g45907 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g46754 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g22610 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28641 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g28884 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g42280.1 CRR21, LOC_Os01g42280 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species
LOC_Os07g07620.1 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
Len_g04760 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434740g0010 OSB1 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
MA_94165g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Msp_g03284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17695 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g05885 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g23774 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g26245 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g38472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38544 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g41060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43369 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g03406 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13575 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g29502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g49579 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53593 DOT4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g60900 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016434 No alias not classified & original description: CDS=1-1746 0.03 OrthoFinder output from all 47 species
Sam_g16206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06005 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g07009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10971 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g13637 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g17686 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g19043 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20183 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21662 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21942 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g25219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53273 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 382
IPR002885 Pentatricopeptide_repeat 97 145
IPR002885 Pentatricopeptide_repeat 233 280
IPR002885 Pentatricopeptide_repeat 201 230
IPR002885 Pentatricopeptide_repeat 173 199
IPR002885 Pentatricopeptide_repeat 409 431
IPR046848 E_motif 452 514
No external refs found!