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  5. Len_g58331

Len_g58331


Description : not classified & original description: none


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g58331

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00234440 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g103931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g104791 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g28379 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G027600.1 Ceric.27G027600 not classified & original description: pacid=50605291... 0.05 OrthoFinder output from all 47 species
Ceric.33G026000.1 Ceric.33G026000 not classified & original description: pacid=50607594... 0.03 OrthoFinder output from all 47 species
Cre04.g213905 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g08281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_39308 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g05830.1 LOC_Os03g05830 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g30370.1 LOC_Os10g30370 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g02031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430689g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g07209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11719 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004730 pseudouridylate synthase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
InterPro domains Description Start Stop
IPR029123 RBM39_linker 383 411
IPR000504 RRM_dom 197 256
IPR000504 RRM_dom 293 363
No external refs found!