Len_g58564 (RPOC1)

Aliases : RPOC1

Description : core component *(RpoC1) of plastid-encoded RNA polymerase & original description: none

Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g58564

Target	Alias	Description	ECC score	Gene Family Method
ATCG00180	RPOC1	DNA-directed RNA polymerase family protein	0.05	OrthoFinder output from all 47 species
Aev_g25869	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.04	OrthoFinder output from all 47 species
Cba_g01180	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.06	OrthoFinder output from all 47 species
Ceric.07G092700.1	RPOC1, Ceric.07G092700	not classified & original description: pacid=50627572...	0.03	OrthoFinder output from all 47 species
Nbi_g14005	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.07	OrthoFinder output from all 47 species
Solyc01g017370.2.1	RPOC1, Solyc01g017370	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.04	OrthoFinder output from all 47 species
Solyc12g062580.1.1	RPOC1, Solyc12g062580	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0046983	protein dimerization activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	8	371
IPR000722	RNA_pol_asu	425	513
IPR000722	RNA_pol_asu	373	422

External Links

No external refs found!

Len_g58564 (RPOC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation