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  5. Pir_g00548

Pir_g00548 (COBL1)


Aliases : COBL1

Description : regulatory protein *(COB) of cellulose-hemicellulose network assembly & original description: none


Gene families : OG0000498 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000498_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g00548
Cluster HCCA: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00083860 COB,... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00111550 SEB1, COBL7,... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
AMTR_s00066p00182490 COBL10,... Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
AT4G27110 COBL11 COBRA-like protein 11 precursor 0.03 OrthoFinder output from all 47 species
AT5G15630 IRX6, COBL4 COBRA-like extracellular glycosyl-phosphatidyl... 0.04 OrthoFinder output from all 47 species
Adi_g021950 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Aev_g10925 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Ala_g14783 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Ala_g34442 IRX6, COBL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15085 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Dac_g00727 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Dcu_g01030 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
Dde_g26915 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Ehy_g05951 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Ehy_g12791 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
GSVIVT01008128001 COB Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
GSVIVT01008129001 IRX6, COBL4 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
GSVIVT01012641001 COBL10 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
GSVIVT01035050001 SEB1, COBL7, ATSEB1 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
GSVIVT01036565001 IRX6, COBL4 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.03 OrthoFinder output from all 47 species
Gb_32178 SEB1, COBL7, ATSEB1 COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Gb_36720 COB COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
LOC_Os03g18910.1 SEB1, COBL7,... COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
LOC_Os03g30250.1 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
LOC_Os03g54750.1 COB, LOC_Os03g54750 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
LOC_Os05g32110.1 COB, LOC_Os05g32110 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
LOC_Os06g47110.1 COBL10, LOC_Os06g47110 COB cellulose microfibrils and hemicellulose interaction protein 0.04 OrthoFinder output from all 47 species
MA_106654g0010 COB COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Mp1g18890.1 COBL10 COB cellulose microfibrils and hemicellulose interaction protein 0.01 OrthoFinder output from all 47 species
Msp_g06029 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Nbi_g04364 SEB1, COBL7, ATSEB1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Nbi_g25499 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Pp3c4_14561V3.1 Pp3c4_14561 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c6_14710V3.1 Pp3c6_14710 COBRA-like protein 8 precursor 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003619 IRX6, COBL4 not classified & original description: CDS=2365-3129 0.03 OrthoFinder output from all 47 species
Smo271954 COBL1 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
Solyc03g070440.4.1 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Solyc10g006450.3.1 COBL10, Solyc10g006450 COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Spa_g24271 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Tin_g12333 COBL1 regulatory protein *(COB) of cellulose-hemicellulose... 0.05 OrthoFinder output from all 47 species
Tin_g29852 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Zm00001e012022_P001 COB, Zm00001e012022 COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Zm00001e035133_P001 COBL10, Zm00001e035133 COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Zm00001e035505_P001 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
Zm00001e038043_P001 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0007265 Ras protein signal transduction IEP HCCA
BP GO:0007266 Rho protein signal transduction IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR006918 COBRA_pln 54 217
No external refs found!