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  5. Pir_g01673

Pir_g01673


Description : ssDNA-binding protein *(OSB) & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g01673

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00248070 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.04 OrthoFinder output from all 47 species
Adi_g003796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036683 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057031 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067033 CRR21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g094349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g095327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101054 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37584 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33113 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56416.t1 CRR22, Aspi01Gene56416 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0641.g080692 No alias not classified & original description: CDS=1-1947 0.03 OrthoFinder output from all 47 species
Cba_g05760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10344 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13534 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19771 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G009700.1 Ceric.09G009700 not classified & original description: pacid=50587563... 0.03 OrthoFinder output from all 47 species
Ceric.22G050700.1 Ceric.22G050700 not classified & original description: pacid=50614024... 0.03 OrthoFinder output from all 47 species
Dac_g04509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06429 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07981 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08816 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05343 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11227 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21994 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g08680.1 LOC_Os03g08680 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Len_g18947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06198 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07038 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07725 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09949 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33303 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10338179g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Msp_g03994 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48763 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07300 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g13299 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34092 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36349 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05062 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22095 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22233 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53705 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g64055 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008229 No alias not classified & original description: CDS=1-3597 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009138 No alias component *(NRPC16/RPC34) of TFIIIe transcription factor... 0.03 OrthoFinder output from all 47 species
Sam_g03859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g096510.3.1 Solyc12g096510 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Tin_g05124 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g10336 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 477 522
IPR002885 Pentatricopeptide_repeat 579 627
IPR002885 Pentatricopeptide_repeat 273 319
IPR002885 Pentatricopeptide_repeat 374 421
IPR032867 DYW_dom 793 883
IPR002885 Pentatricopeptide_repeat 451 473
IPR002885 Pentatricopeptide_repeat 247 270
IPR002885 Pentatricopeptide_repeat 551 577
IPR002885 Pentatricopeptide_repeat 655 677
No external refs found!