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  5. Pir_g01738

Pir_g01738


Description : not classified & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g01738
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Adi_g122615 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g00465 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g17901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G004800.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g44502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g44690 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g21733 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Pir_g20909 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Pir_g44031 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Ppi_g61736 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Spa_g11610 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Tin_g44303 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 1 66
No external refs found!