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  5. Pir_g01808

Pir_g01808


Description : not classified & original description: none


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g01808

Target Alias Description ECC score Gene Family Method Actions
Adi_g017565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012121 No alias not classified & original description: CDS=1-669 0.03 OrthoFinder output from all 47 species
Cba_g17337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G031100.1 Ceric.27G031100 not classified & original description: pacid=50605973... 0.03 OrthoFinder output from all 47 species
Dac_g04581 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g00896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g31680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 218 233
IPR001878 Znf_CCHC 125 141
IPR001878 Znf_CCHC 82 98
IPR001878 Znf_CCHC 44 60
IPR001878 Znf_CCHC 144 159
IPR025836 Zn_knuckle_CX2CX4HX4C 199 213
IPR025836 Zn_knuckle_CX2CX4HX4C 63 78
IPR025836 Zn_knuckle_CX2CX4HX4C 101 116
No external refs found!