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  5. Pir_g02854

Pir_g02854


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g02854

Target Alias Description ECC score Gene Family Method Actions
AT2G33760 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G14730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g003786 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g28165 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07731 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26222 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024917 No alias not classified & original description: CDS=1-3621 0.03 OrthoFinder output from all 47 species
Cba_g04668 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37951 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.04G068200.1 OTP86, Ceric.04G068200 not classified & original description: pacid=50632337... 0.03 OrthoFinder output from all 47 species
Ceric.16G000100.1 REME1, Ceric.16G000100 not classified & original description: pacid=50589905... 0.03 OrthoFinder output from all 47 species
Dac_g04271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08252 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38414 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26396 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_18263 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Gb_19693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
Gb_40766 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.01 OrthoFinder output from all 47 species
Len_g21323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g33505 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_237076g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.01 OrthoFinder output from all 47 species
MA_863836g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.01 OrthoFinder output from all 47 species
Nbi_g28126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04329 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15493 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008324 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015571 No alias not classified & original description: CDS=1-1581 0.04 OrthoFinder output from all 47 species
Sam_g04999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17148 VAC1, ECB2, ATECB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g23276 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008154 actin polymerization or depolymerization IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030041 actin filament polymerization IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 992 1038
IPR002885 Pentatricopeptide_repeat 259 285
IPR002885 Pentatricopeptide_repeat 691 721
IPR002885 Pentatricopeptide_repeat 1066 1091
IPR002885 Pentatricopeptide_repeat 158 182
IPR002885 Pentatricopeptide_repeat 489 519
IPR002885 Pentatricopeptide_repeat 360 383
IPR002885 Pentatricopeptide_repeat 388 418
IPR002885 Pentatricopeptide_repeat 461 485
IPR002885 Pentatricopeptide_repeat 287 317
IPR002885 Pentatricopeptide_repeat 590 619
IPR002885 Pentatricopeptide_repeat 184 230
IPR002885 Pentatricopeptide_repeat 892 934
IPR002885 Pentatricopeptide_repeat 790 836
No external refs found!