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  5. Pir_g02936

Pir_g02936 (UBQ6)


Aliases : UBQ6

Description : component *(eS31) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g02936
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 UBQ6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.05 OrthoFinder output from all 47 species
AT2G47110 UBQ6 ubiquitin 6 0.06 OrthoFinder output from all 47 species
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.05 OrthoFinder output from all 47 species
AT3G62250 UBQ5 ubiquitin 5 0.05 OrthoFinder output from all 47 species
Als_g04717 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18351 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aob_g10329 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g64104 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.08G035500.1 Ceric.08G035500 component *(eL40) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.21G057400.1 UBQ6, Ceric.21G057400 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.27G040600.1 Ceric.27G040600 component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.76 UBQ7, RUB2 Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Cre06.g273600 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre11.g467567 UBQ10 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g08496 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dde_g08812 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dde_g17886 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01028198001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01033876001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Gb_15027 UBQ6 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Gb_41257 No alias component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os01g22490.1 UBQ6, LOC_Os01g22490 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g13170.1 LOC_Os03g13170 component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os05g06770.1 UBQ6, LOC_Os05g06770 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Lfl_g17565 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g27408 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
MA_529552g0010 UBQ6 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp6g16040.1 No alias Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare... 0.02 OrthoFinder output from all 47 species
Mp7g12760.1 UBQ6 component RPS27a of SSU proteome 0.06 OrthoFinder output from all 47 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Msp_g38968 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g13717 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g53062 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c10_25270V3.1 Pp3c10_25270 ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
Pp3c12_5640V3.1 UBQ6, Pp3c12_5640 ubiquitin 6 0.04 OrthoFinder output from all 47 species
Pp3c12_5760V3.1 UBQ6, Pp3c12_5760 ubiquitin 6 0.02 OrthoFinder output from all 47 species
Pp3c20_23170V3.1 Pp3c20_23170 ubiquitin extension protein 1 0.04 OrthoFinder output from all 47 species
Pp3c24_430V3.1 Pp3c24_430 ubiquitin extension protein 1 0.03 OrthoFinder output from all 47 species
Pp3c4_19000V3.1 UBQ6, Pp3c4_19000 ubiquitin 6 0.03 OrthoFinder output from all 47 species
Pp3c8_14230V3.1 UBQ6, Pp3c8_14230 ubiquitin 6 0.02 OrthoFinder output from all 47 species
Ppi_g26909 UBQ11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g07360 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g07364 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo111605 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc01g068045.1.1 UBQ6, Solyc01g068045 component RPS27a of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc03g082570.4.1 Solyc03g082570 component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc08g083120.3.1 Solyc08g083120 component RPL40 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Solyc12g098940.2.1 UBQ6, Solyc12g098940 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Spa_g29603 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g56402 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g56403 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g22845 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28918 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e000962_P001 Zm00001e000962 component RPL40 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e003606_P001 UBQ6, Zm00001e003606 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e009126_P001 UBQ11, Zm00001e009126 Polyubiquitin (Fragment) OS=Acetabularia peniculus... 0.02 OrthoFinder output from all 47 species
Zm00001e009474_P001 Zm00001e009474 component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e026237_P001 UBQ6, Zm00001e026237 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002906 Ribosomal_S27a 102 147
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!