1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g03424

Pir_g03424


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g03424

Target Alias Description ECC score Gene Family Method Actions
Ala_g12498 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27600 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g37595 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g41127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20132 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G030100.1 Ceric.12G030100 not classified & original description: pacid=50600629... 0.03 OrthoFinder output from all 47 species
Dac_g18832 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07356 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g46395 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g48258 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023818001 CRR28 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
LOC_Os01g19380.1 LOC_Os01g19380 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os12g36620.1 LOC_Os12g36620 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Lfl_g12681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39841 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07674 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27836 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43620 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53969 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19790 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g34646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g009790.4.1 Solyc09g009790 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g01551 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23609 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014549_P001 CRR22, Zm00001e014549 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 321 340
IPR002885 Pentatricopeptide_repeat 753 783
IPR002885 Pentatricopeptide_repeat 623 647
IPR002885 Pentatricopeptide_repeat 116 140
IPR002885 Pentatricopeptide_repeat 651 681
IPR002885 Pentatricopeptide_repeat 550 574
IPR002885 Pentatricopeptide_repeat 926 950
IPR002885 Pentatricopeptide_repeat 346 392
IPR002885 Pentatricopeptide_repeat 447 495
IPR002885 Pentatricopeptide_repeat 42 87
IPR002885 Pentatricopeptide_repeat 852 899
IPR002885 Pentatricopeptide_repeat 243 290
IPR002885 Pentatricopeptide_repeat 142 188
No external refs found!