1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g04351

Pir_g04351


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g04351

Target Alias Description ECC score Gene Family Method Actions
AT4G16835 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g002045 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007616 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034782 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g043528 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10279 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33780 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07029 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g18999 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g23735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05266 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36669 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37587 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007441 No alias not classified & original description: CDS=1-1959 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009022 No alias not classified & original description: CDS=1-2334 0.01 OrthoFinder output from all 47 species
Azfi_s0032.g024917 No alias not classified & original description: CDS=1-3621 0.03 OrthoFinder output from all 47 species
Azfi_s0171.g055668 No alias not classified & original description: CDS=1-711 0.03 OrthoFinder output from all 47 species
Azfi_s4087.g117953 CRR22 not classified & original description: CDS=1-597 0.03 OrthoFinder output from all 47 species
Cba_g02684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16282 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29979 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45888 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G013000.1 EMB2758, Ceric.10G013000 not classified & original description: pacid=50613337... 0.01 OrthoFinder output from all 47 species
Ceric.18G000200.1 Ceric.18G000200 not classified & original description: pacid=50622455... 0.03 OrthoFinder output from all 47 species
Ceric.28G069900.1 Ceric.28G069900 not classified & original description: pacid=50570610... 0.03 OrthoFinder output from all 47 species
Ceric.30G071100.1 Ceric.30G071100 not classified & original description: pacid=50608720... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04899 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07665 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20638 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23831 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g33840.1 LOC_Os04g33840 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os04g43430.2 LOC_Os04g43430 RNA editing factor (MEF12) 0.02 OrthoFinder output from all 47 species
Len_g54485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g13055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g07434 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g41402 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15684 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20273 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g22565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23872 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g16678 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18964 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g34904 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03155 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03470 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04512 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30091 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30610 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16492 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g07617 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52122 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo136241 EMB2758 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Solyc01g108180.4.1 Solyc01g108180 RNA editing factor (MEF8). RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Spa_g08093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07666 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23121 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25388 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g45880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 538 560
IPR002885 Pentatricopeptide_repeat 337 360
IPR002885 Pentatricopeptide_repeat 362 410
IPR002885 Pentatricopeptide_repeat 463 511
IPR002885 Pentatricopeptide_repeat 160 207
IPR002885 Pentatricopeptide_repeat 261 309
IPR032867 DYW_dom 678 768
No external refs found!