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  5. Pir_g05992

Pir_g05992


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g05992

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g008091 No alias not classified & original description: CDS=1-1311 0.05 OrthoFinder output from all 47 species
Azfi_s0007.g010823 No alias not classified & original description: CDS=686-1789 0.02 OrthoFinder output from all 47 species
Azfi_s0024.g020434 No alias not classified & original description: CDS=421-1668 0.04 OrthoFinder output from all 47 species
Azfi_s0149.g053226 No alias not classified & original description: CDS=547-1935 0.04 OrthoFinder output from all 47 species
Azfi_s0195.g057243 No alias not classified & original description: CDS=263-1516 0.03 OrthoFinder output from all 47 species
Cba_g02546 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.04 OrthoFinder output from all 47 species
Ceric.12G066500.1 Ceric.12G066500 not classified & original description: pacid=50602160... 0.08 OrthoFinder output from all 47 species
Ceric.14G090500.1 Ceric.14G090500 not classified & original description: pacid=50634831... 0.05 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.03 OrthoFinder output from all 47 species
Ceric.30G049700.1 Ceric.30G049700 not classified & original description: pacid=50608801... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.27 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g01601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012784001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_04294 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g45356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12062 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_93349g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MpVg00970.1 No alias No annotation 0.02 OrthoFinder output from all 47 species
Nbi_g12149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007884 No alias not classified & original description: CDS=207-1496 0.04 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04592 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 74
IPR000504 RRM_dom 110 178
No external refs found!