1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g06454

Pir_g06454


Description : regulatory protein *(SUO) of miRNA biogenesis pathway & original description: none


Gene families : OG0000514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g06454

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00070p00141920 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00088p00111920 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT3G48050 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 OrthoFinder output from all 47 species
AT3G48060 No alias BAH domain ;TFIIS helical bundle-like domain 0.05 OrthoFinder output from all 47 species
AT4G24200 No alias Transcription elongation factor (TFIIS) family protein 0.03 OrthoFinder output from all 47 species
Adi_g005148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g045855 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g071815 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47750 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.06 OrthoFinder output from all 47 species
Ala_g12503 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ala_g20600 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Als_g05756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g62378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03624 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Aob_g17691 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene46498.t1 Aspi01Gene46498 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20508 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g62788 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Ceric.02G029300.1 Ceric.02G029300 not classified & original description: pacid=50584188... 0.06 OrthoFinder output from all 47 species
Ceric.04G080100.1 Ceric.04G080100 not classified & original description: pacid=50631023... 0.03 OrthoFinder output from all 47 species
Ceric.11G079200.1 Ceric.11G079200 not classified & original description: pacid=50595155... 0.03 OrthoFinder output from all 47 species
Ceric.1Z243700.1 Ceric.1Z243700 not classified & original description: pacid=50567873... 0.02 OrthoFinder output from all 47 species
Ceric.24G078000.1 Ceric.24G078000 regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Dac_g15540 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g07123 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007806001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01009936001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01024041001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_02775 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g50840.2 LOC_Os02g50840 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g42490.1 LOC_Os06g42490 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Lfl_g11979 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
MA_33300g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_39143g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_39143g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp4g16160.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g14061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04481 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Nbi_g22070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01867 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g15157 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g16149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16150 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41929 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ppi_g56304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005145 No alias not classified & original description: CDS=1-3426 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018052 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Sam_g04139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29218 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Smo440870 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc03g114060.3.1 Solyc03g114060 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc06g071350.4.1 Solyc06g071350 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc12g089320.3.1 Solyc12g089320 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Tin_g13967 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.06 OrthoFinder output from all 47 species
Zm00001e002441_P003 Zm00001e002441 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e013353_P001 Zm00001e013353 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e037792_P001 Zm00001e037792 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e037793_P001 Zm00001e037793 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019781 NEDD8 activating enzyme activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0045116 protein neddylation IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 350 399
IPR001025 BAH_dom 43 149
No external refs found!