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  5. Pir_g08122

Pir_g08122


Description : component *(eS1) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g08122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT3G04840 No alias Ribosomal protein S3Ae 0.06 OrthoFinder output from all 47 species
AT4G34670 No alias Ribosomal protein S3Ae 0.04 OrthoFinder output from all 47 species
Ala_g38346 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g05100 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Aop_g20489 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g59790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0087.g042272 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g21209 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Cre13.g568650 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Dac_g13329 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dac_g26683 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g29549 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01018024001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01021836001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Gb_02289 No alias component RPS3a of SSU proteome 0.06 OrthoFinder output from all 47 species
Lfl_g26102 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
MA_124901g0010 No alias component RPS3a of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_31004g0010 No alias component RPS3a of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp6g02810.1 No alias component RPS3a of SSU proteome 0.05 OrthoFinder output from all 47 species
Msp_g05152 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g17698 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g27302 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025749 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g07668 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g07669 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g14495 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g30070 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Solyc03g097900.3.1 Solyc03g097900 component RPS3a of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc06g072490.3.1 Solyc06g072490 component RPS3a of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc09g082520.3.1 Solyc09g082520 component RPS3a of SSU proteome 0.06 OrthoFinder output from all 47 species
Spa_g05776 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g01747 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Tin_g39745 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e038777_P001 Zm00001e038777 component RPS3a of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 16 223
No external refs found!