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  5. Pir_g09717

Pir_g09717


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g09717

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G13224 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g008733 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018551 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g041167 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054785 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110734 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08530 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008625 No alias not classified & original description: CDS=712-1971 0.02 OrthoFinder output from all 47 species
Azfi_s0288.g063213 No alias not classified & original description: CDS=60-1199 0.03 OrthoFinder output from all 47 species
Cba_g02546 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.03 OrthoFinder output from all 47 species
Ceric.12G066500.1 Ceric.12G066500 not classified & original description: pacid=50602160... 0.03 OrthoFinder output from all 47 species
Ceric.14G063200.1 Ceric.14G063200 not classified & original description: pacid=50633319... 0.03 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.04 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.03 OrthoFinder output from all 47 species
Cre07.g330300 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre10.g428200 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g15425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07789 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g16051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16527 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01030120001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01032402001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_04294 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_16979 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_29426 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_33012 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g37000.2 LOC_Os06g37000 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os08g23120.1 LOC_Os08g23120 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g02263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g02314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10917 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_93349g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g27850.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MpVg00970.1 No alias No annotation 0.02 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000411 No alias not classified & original description: CDS=1-1413 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012104 No alias not classified & original description: CDS=283-1629 0.03 OrthoFinder output from all 47 species
Sam_g11715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc04g077520.3.1 RBP1, ATRBP1,... RNA-binding protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Spa_g04604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012709_P005 Zm00001e012709 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e032753_P002 Zm00001e032753 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 192 259
IPR000504 RRM_dom 282 351
No external refs found!