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  5. Pir_g09820

Pir_g09820 (ABCB19, ATABCB19,...)


Aliases : ABCB19, ATABCB19, MDR1, MDR11, ATPGP19, ATMDR1, ATMDR11, PGP19

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g09820
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00164980 ATPGP4, PGP4,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00076p00195870 PGP1, ABCB1,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AMTR_s00090p00165440 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AT1G28010 ABCB14, ATABCB14, PGP14 P-glycoprotein 14 0.03 OrthoFinder output from all 47 species
AT3G28390 PGP18 P-glycoprotein 18 0.02 OrthoFinder output from all 47 species
AT4G01830 PGP5 P-glycoprotein 5 0.03 OrthoFinder output from all 47 species
AT4G18050 PGP9 P-glycoprotein 9 0.03 OrthoFinder output from all 47 species
AT4G25960 PGP2 P-glycoprotein 2 0.03 OrthoFinder output from all 47 species
Adi_g002454 PGP13 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g021749 ABCB19,... subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g029160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058585 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g060981 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g105656 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16830 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g39147 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07132 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07131 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33230 ABCB14, ATABCB14, PGP14 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19030 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22201 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33802 No alias subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14003 PGP2 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g32929 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68609 PGP13 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20594.t1 PGP20, Aspi01Gene20594 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene20595.t1 PGP20, Aspi01Gene20595 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene52651.t1 PGP2, Aspi01Gene52651 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s2496.g111845 ABCB19,... subfamily ABCB transporter & original description: CDS=142-3066 0.03 OrthoFinder output from all 47 species
Cba_g59935 ABCB19,... subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000572.4 ATPGP4, PGP4, ABCB4, MDR4 ABC transporter B family member 4 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g03829 ABCB19,... subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g10485 ABCB14, ATABCB14, PGP14 subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g35627 PGP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g40237 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43006 PGP11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03201 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28198 PGP10 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46023 PGP13 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g52100 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01028256001 PGP11 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Gb_10211 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Gb_13906 PGP2 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_18150 PGP13 auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
LOC_Os02g46680.1 PGP2, LOC_Os02g46680 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os04g38570.1 ABCB19,... auxin efflux transporter (ABCB19) 0.06 OrthoFinder output from all 47 species
LOC_Os08g05690.1 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os08g45030.1 PGP1, ABCB1,... subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
Len_g02924 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12935 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56555 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16090 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21852 ABCB19,... subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g40364 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g06270.1 PGP20 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp2g11920.1 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp3g11830.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp7g04390.1 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Msp_g35589 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03862 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28031 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g37290 PGP11 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g56055 PGP21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20355 PGP21 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_16450V3.1 ABCB19,... ATP binding cassette subfamily B19 0.01 OrthoFinder output from all 47 species
Ppi_g03284 PGP13 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g07008 ABCB14, ATABCB14, PGP14 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17867 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000035 PGP13 subfamily ABCB transporter & original description: CDS=555-4511 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014291 PGP2 subfamily ABCB transporter & original description: CDS=1-4248 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019197 No alias subfamily ABCB transporter & original description: CDS=1-2220 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0111.g020710 ABCB19,... not classified & original description: CDS=1-1380 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023107 PGP2 subfamily ABCB transporter & original description: CDS=729-4781 0.03 OrthoFinder output from all 47 species
Smo123915 PGP11 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Smo230688 ABCB19,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Smo410515 ABCB19,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Smo92485 ABCB19,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Smo99885 No alias Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Solyc02g087870.3.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Spa_g19381 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56665 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08541 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44850 ABCB19,... subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e023274_P001 PGP2, Zm00001e023274 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Zm00001e041008_P003 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1103 1251
IPR003439 ABC_transporter-like_ATP-bd 446 594
IPR011527 ABC1_TM_dom 103 376
IPR011527 ABC1_TM_dom 762 1034
No external refs found!