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  5. Pir_g10235

Pir_g10235 (RBCL)


Aliases : RBCL

Description : large subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer & original description: none


Gene families : OG0002607 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002607_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g10235
Cluster HCCA: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.03 OrthoFinder output from all 47 species
AMTR_s00012p00184400 RBCL,... Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
AMTR_s00606p00006850 RBCL,... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.07 OrthoFinder output from all 47 species
Aev_g01070 RBCL large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Cba_g06423 RBCL large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Ceric.02G014200.1 RBCL, Ceric.02G014200 large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.02G046100.1 RBCL, Ceric.02G046100 large subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Ceric.11G075000.1 RBCL, Ceric.11G075000 not classified & original description: pacid=50595488... 0.06 OrthoFinder output from all 47 species
Ceric.16G059900.1 RBCL, Ceric.16G059900 not classified & original description: pacid=50589806... 0.05 OrthoFinder output from all 47 species
Ceric.1Z021900.1 RBCL, Ceric.1Z021900 large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Ceric.1Z162100.1 RBCL, Ceric.1Z162100 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ceric.29G033400.1 RBCL, Ceric.29G033400 large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Ceric.35G017400.1 RBCL, Ceric.35G017400 not classified & original description: pacid=50581736... 0.05 OrthoFinder output from all 47 species
Ceric.36G040400.1 RBCL, Ceric.36G040400 not classified & original description: pacid=50569251... 0.04 OrthoFinder output from all 47 species
Ceric.38G006500.1 RBCL, Ceric.38G006500 large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
GSVIVT01013856001 RBCL Ribulose bisphosphate carboxylase large chain (Fragment)... 0.03 OrthoFinder output from all 47 species
GSVIVT01022403001 RBCL Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.03 OrthoFinder output from all 47 species
Gb_07644 RBCL Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
Gb_15502 RBCL Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
Gb_18620 RBCL Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.03 OrthoFinder output from all 47 species
Gb_37464 RBCL Ribulose bisphosphate carboxylase large chain... 0.03 OrthoFinder output from all 47 species
LOC_Os01g58020.1 RBCL, LOC_Os01g58020 Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.08 OrthoFinder output from all 47 species
LOC_Os10g21268.1 RBCL, LOC_Os10g21268 large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
LOC_Os11g32770.1 LOC_Os11g32770 Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.11 OrthoFinder output from all 47 species
LOC_Os12g10580.1 RBCL, LOC_Os12g10580 component psRPS15 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Lfl_g07296 RBCL large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Mp3g01300.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Ore_g01544 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Pnu_g02095 RBCL large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002257 RBCL not classified & original description: CDS=1-450 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0313.g027218 RBCL not classified & original description: CDS=1-270 0.05 OrthoFinder output from all 47 species
Sam_g02085 No alias large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Smo137874 RBCL Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Solyc00g500063.1.1 RBCL, Solyc00g500063 large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Solyc07g021200.1.1 RBCL, Solyc07g021200 Ribulose bisphosphate carboxylase large chain (Fragment)... 0.08 OrthoFinder output from all 47 species
Spa_g17352 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e002755_P001 RBCL, Zm00001e002755 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.03 OrthoFinder output from all 47 species
Zm00001e042029_P001 RBCL, Zm00001e042029 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e042051_P001 RBCL, Zm00001e042051 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e042083_P001 RBCL, Zm00001e042083 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e042095_P001 RBCL, Zm00001e042095 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Zm00001e042403_P001 RBCL, Zm00001e042403 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR017443 RuBisCO_lsu_fd_N 24 144
IPR000685 RuBisCO_lsu_C 154 462
No external refs found!