Aliases : OTP86
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00111p00107400 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g21065... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00170p00032020 | OTP86,... | Pentatricopeptide repeat-containing protein At5g16860... | 0.04 | OrthoFinder output from all 47 species | |
| AT2G02980 | OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g003872 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g025357 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g110647 | MEF21 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g13039 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g36521 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g09212 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18504 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g21125 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g27295 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g62402 | OSB3 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene67135.t1 | Aspi01Gene67135 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07299 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g38005 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G097800.1 | Ceric.04G097800 | not classified & original description: pacid=50631082... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.13G057100.1 | Ceric.13G057100 | not classified & original description: pacid=50635531... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g05194 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g10056 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g30474 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g22315 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g23986 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g23295 | REME1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01010869001 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_03578 | OTP84 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g10800.1 | DOT4, LOC_Os01g10800 | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g58100.1 | OTP85, LOC_Os03g58100 | RNA editing factor (OTP85) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g54329 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g32792 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g22641 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g32191 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g05347 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g08807 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g09944 | MEF22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g13293 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g27725 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g29294 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g33192 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g33393 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g34702 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g34904 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g41140 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g11821 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g39051 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g57068 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g57666 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g63125 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53286 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g55202 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0006.g003208 | No alias | monogalactosyldiacylglycerol lipase *(HIL1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g40709 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Smo462 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.04 | OrthoFinder output from all 47 species | |
| Smo90480 | No alias | Pentatricopeptide repeat-containing protein At3g02330,... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g05928 | CRR2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g45488 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e003605_P001 | DOT4, Zm00001e003605 | Pentatricopeptide repeat-containing protein DOT4,... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e011467_P004 | emb1899, EMB175,... | Pentatricopeptide repeat-containing protein At5g03800... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 298 | 327 |
| IPR002885 | Pentatricopeptide_repeat | 169 | 189 |
| IPR002885 | Pentatricopeptide_repeat | 501 | 529 |
| IPR002885 | Pentatricopeptide_repeat | 96 | 124 |
| IPR046848 | E_motif | 919 | 980 |
| IPR002885 | Pentatricopeptide_repeat | 195 | 241 |
| IPR002885 | Pentatricopeptide_repeat | 396 | 444 |
| IPR002885 | Pentatricopeptide_repeat | 599 | 645 |
| IPR002885 | Pentatricopeptide_repeat | 701 | 748 |
| IPR002885 | Pentatricopeptide_repeat | 793 | 847 |
| No external refs found! |
