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  5. Pir_g12577

Pir_g12577


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12577

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
AMTR_s00019p00240430 OSB3,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
AT4G19191 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100686 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18040 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05917 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26685 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30202 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30718 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06025 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g13877 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07660 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38168.t1 Aspi01Gene38168 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59237.t1 Aspi01Gene59237 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0093.g043353 No alias not classified & original description: CDS=1-2244 0.03 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.02 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.02 OrthoFinder output from all 47 species
Cba_g04046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07412 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07505 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20479 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20886 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g74879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50877 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g00981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27339 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17141 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g22363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g38043 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17003 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04545 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013097 No alias not classified & original description: CDS=1-2613 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017260 No alias not classified & original description: CDS=1-1968 0.03 OrthoFinder output from all 47 species
Solyc01g049810.4.1 Solyc01g049810 Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
Solyc03g115800.1.1 Solyc03g115800 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g39862 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009229 thiamine diphosphate biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030975 thiamine binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042357 thiamine diphosphate metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
MF GO:0043178 alcohol binding IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 396 445
IPR002885 Pentatricopeptide_repeat 499 545
IPR002885 Pentatricopeptide_repeat 193 240
IPR002885 Pentatricopeptide_repeat 294 342
IPR002885 Pentatricopeptide_repeat 600 648
IPR002885 Pentatricopeptide_repeat 677 700
IPR002885 Pentatricopeptide_repeat 93 119
IPR002885 Pentatricopeptide_repeat 474 496
No external refs found!