Pir_g12795


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12795

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species
Adi_g005632 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16739 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17517 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g28362 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36515 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04438 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05076 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06397 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20750 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30788 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61873 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04156 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33585 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g63229 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01906.t1 Aspi01Gene01906 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14876.t1 OTP80, Aspi01Gene14876 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000396 No alias not classified & original description: CDS=1-2745 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038550 EMB2758 not classified & original description: CDS=1-1851 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.04 OrthoFinder output from all 47 species
Azfi_s1835.g107332 CRR22 not classified & original description: CDS=1-2094 0.05 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.04 OrthoFinder output from all 47 species
Ceric.34G047900.1 Ceric.34G047900 not classified & original description: pacid=50622720... 0.03 OrthoFinder output from all 47 species
Dac_g18772 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19510 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24574 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
LOC_Os05g36350.1 MEF21, LOC_Os05g36350 RNA editing factor (MEF21) 0.03 OrthoFinder output from all 47 species
LOC_Os11g29360.1 OTP82, LOC_Os11g29360 Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Len_g39568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g53456 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07723 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g11189 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19657 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g08590 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28342 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01285 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07471 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29175 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g18904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57464 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25239 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03223 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003060 No alias not classified & original description: CDS=1-2058 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021049 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2289 0.02 OrthoFinder output from all 47 species
Smo92610 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.03 OrthoFinder output from all 47 species
Spa_g07598 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18196 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g45669 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17737 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g39845 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013232_P001 Zm00001e013232 Pentatricopeptide repeat-containing protein At2g36730... 0.03 OrthoFinder output from all 47 species
Zm00001e021453_P001 CRR28, Zm00001e021453 Pentatricopeptide repeat-containing protein At5g06540... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 189 212
IPR002885 Pentatricopeptide_repeat 113 159
IPR002885 Pentatricopeptide_repeat 214 261
No external refs found!